Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs4843388 chr16:86568470 C/T 2.58E-5 110 13.1 17.82 0.52 KM Plot
LAML rs4843389 chr16:86568641 C/G 2.58E-5 110 13.1 17.82 0.52 KM Plot
LAML rs4843392 chr16:86570397 C/T 3.01E-5 109 13.1 16.3 0.52 KM Plot
LAML rs484365 chr13:21845944 G/T 1.06E-8 109 16.2 13.1 0 KM Plot
LAML rs4848492 chr2:118845271 T/C 0.000143 111 19.23 7.17 1 KM Plot
LAML rs4849676 chr2:118843239 T/C 0.000143 111 19.23 7.17 1 KM Plot
LAML rs485361 chr13:21845826 G/T 1.06E-8 109 16.2 13.1 0 KM Plot
LAML rs4854105 chr2:3207950 G/C 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs4854107 chr2:3222889 T/C 9.86E-5 111 0 13.1 15.23 KM Plot
LAML rs4854134 chr2:3206584 A/G 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs4854140 chr2:3217018 C/T 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs4854141 chr2:3217021 C/T 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs4854142 chr2:3217322 T/C 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs4862664 chr4:187136127 T/C 7.6E-5 110 13.1 27.88 0 KM Plot
LAML rs487122 chr13:71353748 G/A 1.89E-5 110 0 5 16.27 KM Plot